species:   Opsin
pid:       PID1948
parent:    n_os_milR_52
paralog:   
locus:     JAAVMX010000004.1:1301051-1301214
matures:   ['UGGCGCUAAGACCUAUGGGGC', 'CCCCUAGGUCUUAGCGCCACC']
srr:       SRR12952903
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952903.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952903.cram JAAVMX010000004.1:1301051-1301214

0 out of bounds
53 alignments
15 proper strand
10 stranded perfect matches

         ***********************                                                                                                    ***********************         
GAAGUAGGGGCCCCCUAGGUCUUAGCGCCACCAAAUUUGUAUACGUUAUGUAUCUGCCCGCACCCGCCCGAGCCAUGCCCCUUGAAAAAUUGCUCGGGCGGGUGCGGGCAGAUACAUUGCGUAUACAAAUUUAGUGGCGCUAAGACCUAUGGGGCCCCCACUUC
(((((.((((((((.((((((((((((((((.((((((((((((((.((((((((((((((((((((((((((.((............)).)))))))))))))))))))))))))).)))))))))))))).)))))))))))))))).)))))))).)))))
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGC--------- l=21 a=5 c
-----------CCCCUAGGUCUUAGCGCCACC------------------------------------------------------------------------------------------------------------------------------------ l=21 a=0 c*
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGC--------- l=21 a=5 ma
-----------CCCCUAGGUCUUAGCGCCACC------------------------------------------------------------------------------------------------------------------------------------ l=21 a=0 ma*

--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUG------------- l=17 a=1 
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGu---------- l=20 a=2 
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGC--------- l=21 a=5 (c,ma)
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCu------ l=24 a=1 
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCC------ l=24 a=1 
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCCC----- l=25 a=2 
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCCa----- l=25 a=1 
--------------------------------------------------------------------------------------------------------------------------------------UGGCGCUAAGACCUAUGGGGCCCCCAuU-- l=28 a=1 
-------------------UCUUAGCGCCACCAAAUUUGUAUA------------------------------------------------------------------------------------------------------------------------- l=24 a=1 

mb-01111
ax-1011011
ku-01
ss-101110011100
fn-001
